BioDataHub
The ultimate VS Code extension for bioinformatics researchers. Discover, manage, visualize, and analyze datasets directly within your IDE.
BioDataHub: An Integrated VS Code Extension
"Managing and analyzing large-scale bioinformatics datasets often requires multiple tools and complex workflows... BioDataHub significantly reduces the time required for dataset preprocessing."
Quick Start
ext install Mubashir-Ali.bio-data-hubEngineered for Biological Insight
Local Search
Instantly index and locate bioinformatics datasets across your machine.
Online Discovery
Access global repositories like Kaggle and GEO directly from VS Code.
Smart CSV Preview
High-performance tabular view for massive gene expression datasets.
Metadata Gen
Automatically extract sources, tags, and statistics for your data.
Interactive Plots
Generate histograms and scatter plots with a single click.
PCA & Clustering
Advanced dimensionality reduction and K-Means visualization.
Beyond the Spreadsheet
BioDataHub transforms raw biological data into interactive visual evidence. From simple distributions to complex multivariate relationships.
Interactive Scatter Plots
Analyze gene correlations across BRCA1, BRCA2, and TP53.
Statistical Histograms
Visualize data distributions and variance instantly.
Command Palette Reference
| Command | Description | Shortcut |
|---|---|---|
| BioDataHub: Search Local Datasets | Index and find local data | - |
| BioDataHub: Search Online Datasets | Search Kaggle/GEO | - |
| BioDataHub: Preview CSV | Interactive tabular view | Ctrl+Shift+P |
| BioDataHub: Visualize Data | Generate plots | Ctrl+Shift+V |
| BioDataHub: PCA & Clustering | Advanced analysis | - |
| BioDataHub: Generate Metadata | Data profiling | Ctrl+Shift+M |
Join the Bio-Data Hub
Contribute to the future of biological data analysis. BioDataHub is open-source and driven by the bioinformatics community.