Dataset discovery
Search local files and connect to public repositories without leaving your editor.
Learn moreB Bioinformatics tooling for VS Code
Turn biological data
into evidence.
BioDataHub is a focused workspace for discovering, inspecting, and analyzing biological datasets. Keep your data, code, and scientific decisions close together.
Metadata first
Generate consistent metadata so every analysis stays traceable and reproducible.
Learn moreVisual exploration
Inspect distributions, correlations, PCA projections, and clusters in context.
Learn more01 / Installation
Start with a clean workspace.
Install BioDataHub in seconds, then open any CSV or tabular file to begin exploring.
VS Code terminal
$ ext install Mubashir-Ali.bio-data-hubRequires VS Code 1.85+Release 1.5.0 stableLicense MIT
02 / Your first workflow
From file to finding.
A compact workflow for moving from raw data to a defensible first read.
01
Open a dataset
Bring a CSV into your project and let BioDataHub inspect its shape.
02
Check the metadata
Review columns, missing values, and summary statistics before analysis.
03
Explore the signal
Use plots, PCA, or clustering to find patterns worth investigating.
expression_matrix.csv1,248 rows
sample_id condition expression
SRR1021 control 8.42
SRR1022 control 7.91
SRR1023 treated 12.08
03 / Visualization
See the structure
in your data.
Move from a dense matrix to a visual hypothesis with built-in exploratory analysis. Each view is designed to be read, shared, and reproduced.
Explore analysis commandsPCA / samples control treated
PC1 48.6%PC2 17.2%
04 / Reference
Command palette
Everything you need is one command away.
BioDataHub: Search DatasetsSearch indexed datasets on your machine
BioDataHub: Preview CSVOpen a performant tabular preview
BioDataHub: Generate MetadataCreate a metadata summary for a file
BioDataHub: Run PCAProject observations into principal components
Research & citation
Built for transparent science.
Read the preprint describing BioDataHub and its role in reducing friction in bioinformatics workflows.